metahdep - Hierarchical Dependence in Meta-Analysis
Tools for meta-analysis in the presence of hierarchical (and/or sampling) dependence, including with gene expression studies
Last updated 5 months ago
microarraydifferentialexpression
3.30 score 2 scripts 325 downloadsSigTree - Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.
Last updated 8 years ago
2.30 score 3 scripts 205 downloadsphyext2 - An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase'
Based on (but not identical to) the no-longer-maintained package 'phyext', provides enhancements to 'phylobase' classes, specifically for use by package 'SigTree'; provides classes and methods which help users manipulate branch-annotated trees (as in 'SigTree'); also provides support for a few other extra features.
Last updated 10 years ago
1.48 score 1 dependents 8 scripts 153 downloads