{ "_id": "6a0f63d2acfb0bcc41c5ca1b", "Package": "phyext2", "Type": "Package", "Title": "An Extension (for Package 'SigTree') of Some of the Classes in\nPackage 'phylobase'", "Version": "0.0.4", "Date": "2015-07-27", "Author": "J. Conrad Stack", "Maintainer": "John R. Stevens ", "Description": "Based on (but not identical to) the no-longer-maintained\npackage 'phyext', provides enhancements to 'phylobase' classes,\nspecifically for use by package 'SigTree'; provides classes and\nmethods which help users manipulate branch-annotated trees (as\nin 'SigTree'); also provides support for a few other extra\nfeatures.", "License": "GPL-3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-21 10:24:01 UTC", "User": "root" }, "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev", "Repository": "https://johnrstevens.r-universe.dev", "Date/Publication": "2015-07-27 00:00:00 UTC", "RemoteUrl": "https://github.com/cran/phyext2", "RemoteRef": "HEAD", "RemoteSha": "37038c4372880462f5cca0a0fa803509ca9c2732", "MD5sum": "89931a04aa58739117253c9feb59c93a", "_user": "johnrstevens", "_type": "src", "_file": "phyext2_0.0.4.tar.gz", "_fileid": "8da80f93b3349618635ef15092cd47f00fb6278ce61e8f27af44c3b954a6e146", "_filesize": 124168, "_sha256": "8da80f93b3349618635ef15092cd47f00fb6278ce61e8f27af44c3b954a6e146", "_created": "2026-05-21T10:24:01.000Z", "_published": "2026-05-21T19:58:10.788Z", "_distro": "noble", "_jobs": [ { "job": 77257136182, "time": 145, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7133314521" }, { "job": 77257136531, "time": 139, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7133312129" }, { "job": 77257136208, "time": 266, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7133335971" }, { "job": 77257136430, "time": 253, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7133345903" }, { "job": 77257135652, "time": 185, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7133265331" }, { "job": 77257135637, "time": 111, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7145844530" }, { "job": 77257136388, "time": 303, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7133366735" }, { "job": 77257136435, "time": 95, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7133297748" }, { "job": 77257136317, "time": 107, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7133301869" } ], "_buildurl": "https://github.com/r-universe/johnrstevens/actions/runs/26220104720", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/phyext2", "_commit": { "id": "37038c4372880462f5cca0a0fa803509ca9c2732", "author": "John R. Stevens ", "committer": "Gabor Csardi ", "message": "version 0.0.4\n", "time": 1437955200 }, "_maintainer": { "name": "John R. Stevens", "email": "john.r.stevens@usu.edu", "login": "johnrstevens", "description": "", "uuid": 26309773 }, "_registered": true, "_dependencies": [ { "package": "methods", "role": "Imports" }, { "package": "phylobase", "role": "Imports" }, { "package": "ape", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "stats", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "johnrstevens", "count": 2, "uuid": 26309773 } ], "_userbio": { "uuid": 26309773, "type": "user", "name": "johnrstevens" }, "_downloads": { "count": 224, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phyext2" }, "_searchresults": 8, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/phyext2.html", "manual.pdf" ], "_realowner": "johnrstevens", "_cranurl": false, "_releases": [ { "version": "0.0.3", "date": "2015-07-17" }, { "version": "0.0.4", "date": "2015-07-27" } ], "_exports": [ ".edge.index", ".get.nexus.block.inds", ".split.tokens", ".strip.tree.comments", "addSubNode", "collapse.singletons", "collapse.subnodes", "collapse.to.singles", "contData", "deep.phy.copy", "discData", "expand.singles", "get.nexus.comments", "get.nodenames", "get.tree.weights", "getEmptyDataFrame", "getSubNodeData", "getSubNodeEdgeInds", "getSubNodePosish", "guess.datatype", "has.block", "has.characters2", "has.weights", "hasData", "hasDataColumn", "hasSubNodes", "hasWeight", "is.simmap", "match.order", "newlabels.v15", "newlabels.v1x", "noneData", "nSubNodes", "phyext", "phyextPlot", "read.characters2", "read.nexus.block", "read.nexus.simmap", "read.simmap", "read.simmap.new", "rmdata", "showSubNodes", "snbranch", "sndata", "sndata<-", "snid", "snposition", "strip", "tipdate.ci", "treeHeight", "validPhylo4d_ext", "weight", "weight<-", 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